Editing Nanopore RNA Sequencing Protocol (section)

=====Installing EpiNano=====

Now that all the pre-requisites are checked, we can go ahead and install ''EpiNano'' itself. For simplicity, I will keep mine in the <code>~/Research</code> directory, so that all of the stuff I use for the nanopore will be kept in one place. You can place it wherever you like, since we will define (or have defined) the file path to it in the console.

<code>Bash</code>
<syntaxhighlight lang="Bash">
cd ~/Research
git clone "https://github.com/novoalab/EpiNano.git"
</syntaxhighlight>

''EpiNano'' should now be installed. Note that there is a '''ReadMe''' available for ''EpiNano'' available [https://github.com/novoalab/EpiNano here] which goes over the requirements for it and how to execute it from the shell (Note: this readme should also be found as a file in your ''EpiNano'' folder after you copy the repo). It also describes some of the arguments that you will include when you execute it later.